STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4804PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: spc:Sputcn32_2888 beta-lactamase domain-containing protein; IMG reference gene:2503010561; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase. (433 aa)    
Predicted Functional Partners:
Dalk_4376
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dol:Dole_2585 beta-lactamase domain-containing protein; IMG reference gene:2503010124; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; TIGRFAM: conserved hypothetical protein.
  
  
 
0.804
Dalk_4803
Hypothetical protein Dalk_4803; IMG reference gene:2503010560.
       0.773
Dalk_0837
PFAM: Polyprenyl synthetase; KEGG: pca:Pcar_1668 geranyltranstransferase (farnesyldiphosphate synthase); IMG reference gene:2503006538; PFAM: Polyprenyl synthetase.
  
    0.669
Dalk_3236
PFAM: Polyprenyl synthetase; KEGG: dol:Dole_3230 polyprenyl synthetase; IMG reference gene:2503008965; PFAM: Polyprenyl synthetase.
  
    0.669
Dalk_3122
TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: dol:Dole_1636 dimethyladenosine transferase; IMG reference gene:2503008851; PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase.
  
  
 0.598
Dalk_4397
KEGG: dol:Dole_2746 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; IMG reference gene:2503010145; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase.
   
  
 0.497
Dalk_1913
PFAM: Ribosomal protein L25/L23; KEGG: dol:Dole_0710 ribosomal protein L25/L23; IMG reference gene:2503007625; PFAM: Ribosomal protein L23.
  
  
 0.480
Dalk_1183
KEGG: dol:Dole_2445 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; IMG reference gene:2503006885; PFAM: Toprim domain; Topoisomerase DNA binding C4 zinc finger; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial.
 
  
 0.443
Dalk_4802
Hypothetical protein Dalk_4802; IMG reference gene:2503010559.
       0.440
Dalk_1064
Transketolase, subunit B; PFAM: Transketolase central region; Transketolase domain protein; KEGG: dol:Dole_1130 transketolase central region; IMG reference gene:2503006765; PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain.
  
    0.418
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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