STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4829KEGG: dol:Dole_1413 hypothetical protein; IMG reference gene:2503010587; PFAM: PAP2 superfamily. (210 aa)    
Predicted Functional Partners:
Dalk_2091
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: dol:Dole_0266 amine oxidase; IMG reference gene:2503007810; PFAM: Flavin containing amine oxidoreductase.
  
 
 0.982
Dalk_4869
PFAM: fatty acid hydroxylase; KEGG: mgm:Mmc1_1104 sterol desaturase-related protein; IMG reference gene:2503010627; PFAM: Fatty acid hydroxylase superfamily.
  
 0.975
Dalk_3709
KEGG: scl:sce2886 hypothetical protein; IMG reference gene:2503009453.
    
 0.929
Dalk_1056
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_2590 beta-ketoacyl synthase; IMG reference gene:2503006757; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA.
   
 
 0.924
Dalk_3191
PFAM: short-chain dehydrogenase/reductase SDR; protein of unknown function DUF35; Sterol-binding domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KR domain protein; KEGG: dol:Dole_1550 short-chain dehydrogenase/reductase SDR; IMG reference gene:2503008920; PFAM: Rubredoxin-like zinc ribbon domain (DUF35_N); 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; DUF35 OB-fold domain; short chain dehydrogenase; SCP-2 sterol transfer family.
  
 
 0.903
Dalk_1355
KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; IMG reference gene:2503007060; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I.
  
  
 0.897
Dalk_2553
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: mac:MA0334 uncharacterized membrane protein; IMG reference gene:2503008274; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
   
 
 0.890
Dalk_1749
KEGG: sat:SYN_01693 acyl carrier protein; IMG reference gene:2503007460; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
   
 
 0.886
Dalk_3308
TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: dvl:Dvul_1852 acyl carrier protein; IMG reference gene:2503009038; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
   
 
 0.886
Dalk_0837
PFAM: Polyprenyl synthetase; KEGG: pca:Pcar_1668 geranyltranstransferase (farnesyldiphosphate synthase); IMG reference gene:2503006538; PFAM: Polyprenyl synthetase.
  
 0.833
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.