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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4875TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: mmp:MMP0739 Asp/Glu racemase:aspartate racemase; IMG reference gene:2503010633; PFAM: Asp/Glu/Hydantoin racemase; TIGRFAM: aspartate racemase. (230 aa)    
Predicted Functional Partners:
Dalk_2414
TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: GSVIVT00027272001; assembled CDS; K00608 aspartate carbamoyltransferase; IMG reference gene:2503008134; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase.
     
 0.757
Dalk_2057
KEGG: dol:Dole_1427 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylamine/glycine ligase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylglycinamide synthetase; IMG reference gene:2503007774; PFAM: Phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein.
  
   0.730
Dalk_4332
KEGG: dol:Dole_1490 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; IMG reference gene:2503010080; PFAM: domain; FAD binding domain; TIGRFAM: L-aspartate oxidase.
     
 0.729
Dalk_0016
KEGG: sfu:Sfum_0268 amidophosphoribosyltransferase; IMG reference gene:2503005711; PFAM: Phosphoribosyl transferase domain; TIGRFAM: amidophosphoribosyltransferase.
   
 
  0.715
Dalk_3482
TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dol:Dole_0122 amidophosphoribosyltransferase; IMG reference gene:2503009214; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase.
   
 
  0.715
Dalk_0154
PFAM: aminotransferase class V; Pyridoxal-dependent decarboxylase; KEGG: rca:Rcas_2190 pyridoxal-dependent decarboxylase; IMG reference gene:2503005849; PFAM: Pyridoxal-dependent decarboxylase conserved domain.
    
  0.649
Dalk_0881
PFAM: sugar isomerase (SIS); KEGG: dol:Dole_3201 glutamine--fructose-6-phosphate transaminase (isomerizing); IMG reference gene:2503006582; PFAM: SIS domain; Glutamine amidotransferases class-II.
   
 0.580
Dalk_3943
PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: tdn:Suden_1327 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; IMG reference gene:2503009687; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
     
 0.525
Dalk_3765
Arginase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: mgm:Mmc1_3564 putative agmatinase; IMG reference gene:2503009509; PFAM: Arginase family; TIGRFAM: agmatinase.
    
  0.493
Dalk_0848
Class II fumarate hydratase, FumC; PFAM: fumarate lyase; delta crystallin domain protein; KEGG: sfu:Sfum_2102 fumarate hydratase; IMG reference gene:2503006549; PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II.
   
  0.491
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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