STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4888O-antigen polymerase; PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2418 TPR repeat-containing protein; IMG reference gene:2503010646; PFAM: Tetratricopeptide repeat; O-Antigen ligase. (762 aa)    
Predicted Functional Partners:
Dalk_3778
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gvi:gll1119 unknown protein; IMG reference gene:2503009522.
 
  
  0.931
Dalk_3892
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein; IMG reference gene:2503009636; PFAM: Tetratricopeptide repeat.
 
  
  0.931
Dalk_4303
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2668 TPR repeat-containing protein; IMG reference gene:2503010051; PFAM: Tetratricopeptide repeat.
 
  
  0.931
Dalk_4255
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_4736 TPR repeat-containing protein; IMG reference gene:2503010003; PFAM: Tetratricopeptide repeat.
 
  
  0.902
Dalk_1967
PFAM: TPR repeat-containing protein; Sporulation domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: apj:APJL_0347 putative lipoprotein; IMG reference gene:2503007684; PFAM: Tetratricopeptide repeat; Sporulation related domain.
 
  
  0.895
Dalk_2170
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2417 TPR repeat-containing protein; IMG reference gene:2503007890; PFAM: Tetratricopeptide repeat.
 
  
  0.892
Dalk_3141
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pmt:PMT0296 TPR repeat-containing protein; IMG reference gene:2503008870; PFAM: Tetratricopeptide repeat.
 
  
  0.887
Dalk_1810
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_4082 tetratricopeptide TPR_2 repeat protein; IMG reference gene:2503007521; PFAM: Tetratricopeptide repeat.
 
  
  0.878
Dalk_3175
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sfu:Sfum_1870 tetratricopeptide TPR_2 repeat protein; IMG reference gene:2503008904; PFAM: Tetratricopeptide repeat.
 
  
  0.860
Dalk_2164
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2471 TPR repeat-containing protein; IMG reference gene:2503007884; PFAM: Tetratricopeptide repeat.
 
  
  0.854
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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