STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4949KEGG: rpb:RPB_2359 hypothetical protein; IMG reference gene:2503010708. (273 aa)    
Predicted Functional Partners:
Dalk_4950
TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: ote:Oter_1045 NAD+ synthetase; IMG reference gene:2503010709; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase.
 
 
 0.885
Dalk_4951
PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: mxa:MXAN_5575 hypothetical protein; IMG reference gene:2503010710; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family.
 
 
 0.862
Dalk_3607
Nicotinate phosphoribosyltransferase; Catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; IMG reference gene:2503009339; PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: putative nicotinate phosphoribosyltransferase.
 
 
 0.823
Dalk_4188
5-oxoprolinase (ATP-hydrolyzing); PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: syp:SYNPCC7002_A2513 N-methylhydantoinase A; 5-oxoprolinase; IMG reference gene:2503009935; PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinase/oxoprolinase N-terminal region.
 
  
  0.799
Dalk_5015
TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine or other phosphorylase family 1; KEGG: sfu:Sfum_2962 purine nucleoside phosphorylase I, inosine and guanosine-specific; IMG reference gene:2503010774; PFAM: Phosphorylase superfamily; TIGRFAM: purine nucleoside phosphorylase I, inosine and guanosine-specific; inosine guanosine and xanthosine phosphorylase family.
    
 0.746
Dalk_3638
PFAM: ribonuclease II; KEGG: dol:Dole_0448 exoribonuclease II; IMG reference gene:2503009382; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases.
    
  0.741
Dalk_4948
PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_7192 hydrolase, NUDIX family; IMG reference gene:2503010707; PFAM: NUDIX domain.
 
     0.626
Dalk_1098
PFAM: Silent information regulator protein Sir2; KEGG: sfu:Sfum_0751 silent information regulator protein Sir2; IMG reference gene:2503006799; PFAM: Sir2 family.
  
 0.608
Dalk_1874
PFAM: Silent information regulator protein Sir2; KEGG: sat:SYN_00042 sir2 family protein; IMG reference gene:2503007586; PFAM: Sir2 family.
  
 0.608
Dalk_3328
TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: dol:Dole_0775 carbohydrate kinase, YjeF related protein; IMG reference gene:2503009058; PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF C-terminal region, hydroxyethylthiazole kinase-related; yjeF N-terminal region.
  
    0.588
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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