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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4968PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DSH domain protein; SMART: DEAD-like helicases; KEGG: dol:Dole_1028 DEAD/DEAH box helicase domain-containing protein; IMG reference gene:2503010727; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; DSHCT (NUC185) domain. (700 aa)    
Predicted Functional Partners:
Dalk_5206
KEGG: dol:Dole_0378 hypothetical protein; IMG reference gene:2503010965.
  
     0.589
Dalk_0881
PFAM: sugar isomerase (SIS); KEGG: dol:Dole_3201 glutamine--fructose-6-phosphate transaminase (isomerizing); IMG reference gene:2503006582; PFAM: SIS domain; Glutamine amidotransferases class-II.
  
     0.582
Dalk_4969
PFAM: nitrogen-fixing NifU domain protein; KEGG: dol:Dole_0318 NifU domain-containing protein; IMG reference gene:2503010728; PFAM: NifU-like N terminal domain.
       0.520
Dalk_0444
TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: sfu:Sfum_1740 cobyrinic acid a,c-diamide synthase; IMG reference gene:2503006144; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase.
   
    0.503
Dalk_3887
KEGG: sat:SYN_02852 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: DEAD-like helicases; IMG reference gene:2503009631; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); Domain of unknown function (DUF3418); DEAD/DEAH box helicase; Domain of unknown function (DUF1605); TIGRFAM: ATP-dependent helicase HrpA.
 
     0.503
Dalk_4298
TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: dol:Dole_2672 cobyrinic acid a,c-diamide synthase; IMG reference gene:2503010046; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase.
   
    0.503
Dalk_3300
TIGRFAM: MJ0042 family finger-like protein; KEGG: dol:Dole_3051 response regulator receiver protein; IMG reference gene:2503009030; TIGRFAM: MJ0042 family finger-like domain.
  
     0.468
Dalk_0917
KEGG: dol:Dole_0008 hypothetical protein; IMG reference gene:2503006618; PFAM: Predicted membrane protein (DUF2232).
  
     0.458
Dalk_0959
Glycerol-3-phosphate O-acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: dol:Dole_1991 glycerol-3-phosphate O-acyltransferase; IMG reference gene:2503006660; PFAM: Acyltransferase; TIGRFAM: glycerol-3-phosphate O-acyltransferase.
  
     0.451
Dalk_0887
Amylo-alpha-16-glucosidase; PFAM: alpha amylase catalytic region; Amylo-alpha-16-glucosidase; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_00295 glycogen debranching enzyme/alpha-amylase; IMG reference gene:2503006588; PFAM: Amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme N terminal; Alpha amylase, catalytic domain; TIGRFAM: glycogen debranching enzyme, archaeal type, putative.
  
     0.442
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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