STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_4974Citrate Synthase, Type II; KEGG: dol:Dole_0026 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; IMG reference gene:2503010733; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type). (433 aa)    
Predicted Functional Partners:
Dalk_3783
Succinate-CoA ligase (ADP-forming), beta subunit; KEGG: dol:Dole_0074 succinyl-CoA synthetase, beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; IMG reference gene:2503009527; PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit.
  
 0.998
Dalk_0818
TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: dol:Dole_2374 malate dehydrogenase, NAD-dependent; IMG reference gene:2503006519; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent.
  
 0.996
Dalk_3952
Aconitate hydratase; Catalyzes the conversion of citrate to isocitrate; IMG reference gene:2503009697; PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase, putative, Aquifex type.
  
 0.996
Dalk_1323
Phosphoenolpyruvate phosphomutase; TIGRFAM: cytidyltransferase-related domain protein; phosphoenolpyruvate phosphomutase; PFAM: cytidylyltransferase; KEGG: azo:azo2698 putative phosphoenolpyruvate phosphomutase; IMG reference gene:2503007027; PFAM: Cytidylyltransferase; TIGRFAM: phosphoenolpyruvate phosphomutase; cytidyltransferase-related domain.
  
 0.991
Dalk_3456
KEGG: ypb:YPTS_0831 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; IMG reference gene:2503009188; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region.
  
 
 0.991
Dalk_3943
PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: tdn:Suden_1327 delta-1-pyrroline-5-carboxylate dehydrogenase / L-proline dehydrogenase; IMG reference gene:2503009687; PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family.
  
 0.971
Dalk_3784
TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: dol:Dole_0073 succinyl-CoA synthetase, alpha subunit; IMG reference gene:2503009528; PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit.
  
 0.968
Dalk_3157
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_1557 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; IMG reference gene:2503008886; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
  
 0.965
Dalk_2101
PFAM: MmgE/PrpD family protein; KEGG: pth:PTH_1493 hypothetical protein; IMG reference gene:2503007820; PFAM: MmgE/PrpD family.
  
 
 0.962
Dalk_1934
TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: dol:Dole_1908 isocitrate dehydrogenase, NADP-dependent; IMG reference gene:2503007651; PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type.
 
 
 0.961
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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