STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5002KEGG: cbe:Cbei_4049 hypothetical protein; IMG reference gene:2503010761. (293 aa)    
Predicted Functional Partners:
Dalk_5000
PFAM: microcompartments protein; KEGG: lin:lin1116 hypothetical protein; IMG reference gene:2503010759; PFAM: BMC domain.
 
     0.794
Dalk_4998
PFAM: dehydratase medium subunit; KEGG: lwe:lwe1112 propanediol utilization dehydratase, medium subunit; IMG reference gene:2503010757; PFAM: Dehydratase medium subunit.
 
     0.713
Dalk_4999
PFAM: dehydratase large subunit; KEGG: tex:Teth514_1953 glycerol dehydratase; IMG reference gene:2503010758; PFAM: Dehydratase large subunit.
 
     0.700
Dalk_4997
PFAM: dehydratase small subunit; KEGG: lmo:lmo1155 hypothetical protein; IMG reference gene:2503010756; PFAM: Dehydratase small subunit.
 
     0.683
Dalk_4995
Hypothetical protein Dalk_4995; KEGG: lbr:LVIS_1611 diol dehydratase medium subunit; IMG reference gene:2503010754.
 
     0.657
Dalk_4996
PFAM: Diol/glycerol dehydratase reactivating factor large subunit; KEGG: tex:Teth514_1950 hypothetical protein; IMG reference gene:2503010755; PFAM: Diol dehydratase reactivase ATPase-like domain.
 
     0.649
Dalk_4987
PFAM: Aldehyde Dehydrogenase; KEGG: tex:Teth514_1942 aldehyde dehydrogenase; IMG reference gene:2503010746; PFAM: Aldehyde dehydrogenase family.
 
     0.632
Dalk_4988
PFAM: protein of unknown function DUF336; KEGG: rpc:RPC_1173 protein of unknown function DUF336; IMG reference gene:2503010747; PFAM: Domain of unknown function (DUF336).
 
     0.632
Dalk_5001
PFAM: microcompartments protein; KEGG: rru:Rru_A0905 microcompartments protein; IMG reference gene:2503010760; PFAM: BMC domain.
 
     0.600
Dalk_4992
TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbt:CLH_1849 ethanolamine utilization protein EutJ; IMG reference gene:2503010751; PFAM: MreB/Mbl protein; TIGRFAM: ethanolamine utilization protein EutJ family protein.
 
     0.508
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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