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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5007PFAM: TrkA-N domain protein; KEGG: pca:Pcar_0085 K+ transport systems, NAD-binding component; IMG reference gene:2503010766; PFAM: TrkA-N domain; TrkA-C domain. (218 aa)    
Predicted Functional Partners:
Dalk_5008
Potassium uptake protein, TrkH family; KEGG: chy:CHY_1575 potassium uptake protein KtrB; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; IMG reference gene:2503010767; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
 
 0.983
Dalk_0381
TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dol:Dole_3217 TrkH family potassium uptake protein; IMG reference gene:2503006078; PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
  
 
 0.800
Dalk_4012
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: dol:Dole_1570 competence/damage-inducible protein CinA; IMG reference gene:2503009757; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain.
    
 0.735
Dalk_0554
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dol:Dole_2231 sun protein; IMG reference gene:2503006255; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB.
  
   0.691
Dalk_1776
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ppd:Ppro_1969 molybdopterin biosynthesis MoaE; IMG reference gene:2503007487; PFAM: MoaE protein.
   
    0.596
Dalk_4009
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dol:Dole_3062 uroporphyrin-III C-methyltransferase; IMG reference gene:2503009754; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Uroporphyrinogen-III synthase HemD; TIGRFAM: uroporphyrin-III C-methyltransferase.
  
    0.565
Dalk_2633
NAD+ synthetase; KEGG: aba:Acid345_2524 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; IMG reference gene:2503008355; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase.
  
 
  0.554
Dalk_4950
TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: ote:Oter_1045 NAD+ synthetase; IMG reference gene:2503010709; PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase.
  
 
  0.554
Dalk_5009
Hypothetical protein Dalk_5009; IMG reference gene:2503010768.
       0.516
Dalk_4347
L-seryl-tRNA(Sec) selenium transferase (selenocysteine synthase); Catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; IMG reference gene:2503010095; PFAM: L-seryl-tRNA selenium transferase; TIGRFAM: seryl-tRNA(sec) selenium transferase.
   
    0.504
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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