STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5073PFAM: regulatory protein MarR; KEGG: mhu:Mhun_0646 MarR family transcriptional regulator; IMG reference gene:2503010832; PFAM: MarR family. (157 aa)    
Predicted Functional Partners:
Dalk_5072
PFAM: HNH endonuclease; KEGG: dol:Dole_0839 HNH endonuclease; IMG reference gene:2503010831; PFAM: HNH endonuclease.
       0.480
Dalk_0850
PFAM: regulatory protein MarR; KEGG: ckl:CKL_0340 transcriptional regulator; IMG reference gene:2503006551; PFAM: MarR family.
  
     0.461
Dalk_5074
Hypothetical protein Dalk_5074; IMG reference gene:2503010833.
       0.443
Dalk_0224
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: mgm:Mmc1_1581 aminotransferase, class V; IMG reference gene:2503005920; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain.
  
  
  0.409
Dalk_5070
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_0826 PAS/PAC sensor signal transduction histidine kinase; IMG reference gene:2503010829; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
     
 0.408
Dalk_2752
Transketolase family protein; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: dol:Dole_0367 transketolase; IMG reference gene:2503008475; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast.
   
 
 0.404
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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