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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5086PFAM: regulatory protein MarR; KEGG: cbt:CLH_2427 transcriptional regulator, MarR/EmrR family; IMG reference gene:2503010845; PFAM: MarR family. (145 aa)    
Predicted Functional Partners:
Dalk_5085
PFAM: protein of unknown function DUF161; KEGG: cac:CAC0198 hypothetical protein; IMG reference gene:2503010844; PFAM: Uncharacterized BCR, YitT family COG1284.
 
     0.880
Dalk_1618
PFAM: regulatory protein MarR; KEGG: swo:Swol_0269 transcriptional regulator, MarR family; IMG reference gene:2503007328; PFAM: MarR family.
  
     0.592
Dalk_2052
PFAM: regulatory protein MarR; KEGG: bac:BamMC406_4328 transcriptional regulator, MarR family; IMG reference gene:2503007769; PFAM: MarR family.
  
     0.523
Dalk_3865
PFAM: regulatory protein MarR; KEGG: sat:SYN_00652 MarR family transcriptional regulator; IMG reference gene:2503009609; PFAM: MarR family.
  
     0.460
Dalk_4039
PFAM: FAD linked oxidase domain protein; KEGG: dol:Dole_0769 FAD linked oxidase domain-containing protein; IMG reference gene:2503009784; PFAM: FAD binding domain.
  
  
  0.413
Dalk_2752
Transketolase family protein; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: dol:Dole_0367 transketolase; IMG reference gene:2503008475; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast.
   
 
 0.404
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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