STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5096PFAM: MGS domain protein; KEGG: dol:Dole_1515 phosphoribosylaminoimidazolecarboxamide formyltransferase; IMG reference gene:2503010855; PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain. (227 aa)    
Predicted Functional Partners:
Dalk_1969
TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfu:Sfum_1185 phosphoribosylglycinamide formyltransferase; IMG reference gene:2503007686; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent.
 0.999
Dalk_2057
KEGG: dol:Dole_1427 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylamine/glycine ligase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylglycinamide synthetase; IMG reference gene:2503007774; PFAM: Phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein.
 
 0.999
Dalk_3269
PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: dol:Dole_1516 phosphoribosylaminoimidazolecarboxamide formyltransferase; IMG reference gene:2503008999; PFAM: AICARFT/IMPCHase bienzyme.
  
  0.996
Dalk_3289
KEGG: dol:Dole_0483 phosphoribosylformylglycinamidine synthase; IMG reference gene:2503009019; TIGRFAM: phosphoribosylformylglycinamidine synthase I.
 
 
 0.983
Dalk_1188
TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: gur:Gura_2064 adenylosuccinate lyase; IMG reference gene:2503006890; PFAM: Lyase; Adenylosuccinate lyase C-terminus; TIGRFAM: adenylosuccinate lyase.
  
 0.981
Dalk_3310
PFAM: Orn/Lys/Arg decarboxylase major region; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dol:Dole_2082 glycine hydroxymethyltransferase; IMG reference gene:2503009040; PFAM: Serine hydroxymethyltransferase.
  
 0.979
Dalk_3482
TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: dol:Dole_0122 amidophosphoribosyltransferase; IMG reference gene:2503009214; PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase.
 
 0.979
Dalk_3639
Formyltetrahydrofolate synthetase (Formate-tetrahydrofolate ligase); Catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; IMG reference gene:2503009383; PFAM: Formate--tetrahydrofolate ligase.
 
 0.978
Dalk_0709
KEGG: dol:Dole_0293 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; IMG reference gene:2503006410; PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase.
 
  
 0.973
Dalk_0912
KEGG: dol:Dole_2369 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; IMG reference gene:2503006613; PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase.
  
 0.973
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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