STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5116PFAM: lipid A biosynthesis domain protein; KEGG: psb:Psyr_5108 lipid A biosynthesis, N-terminal; IMG reference gene:2503010875; PFAM: Lipid A Biosynthesis N-terminal domain. (107 aa)    
Predicted Functional Partners:
Dalk_5117
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1596 glycosyl transferase, group 2 family protein; IMG reference gene:2503010876; PFAM: Glycosyl transferase family 2.
 
     0.851
Dalk_5115
KEGG: sus:Acid_7493 hypothetical protein; IMG reference gene:2503010874.
       0.782
Dalk_0351
KEGG: dol:Dole_1433 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; IMG reference gene:2503006048; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase.
     
 0.640
Dalk_1789
TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: dol:Dole_2842 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; IMG reference gene:2503007500; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
     
 0.566
Dalk_0350
PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dol:Dole_1433 tetraacyldisaccharide 4'-kinase; IMG reference gene:2503006047; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase).
  
  
 0.550
Dalk_3702
PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: dol:Dole_1762 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; IMG reference gene:2503009446; PFAM: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase).
  
  
 0.539
Dalk_5118
KEGG: bph:Bphy_3021 hypothetical protein; IMG reference gene:2503010877.
       0.500
Dalk_5119
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mka:MK0992 Fe-S oxidoreductase; IMG reference gene:2503010878; PFAM: Radical SAM superfamily; B12 binding domain.
       0.500
Dalk_5114
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: kcr:Kcr_0167 magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase; IMG reference gene:2503010873; PFAM: B12 binding domain.
       0.468
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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