STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5153KEGG: dol:Dole_1035 hypothetical protein; IMG reference gene:2503010912; PFAM: Prokaryotic N-terminal methylation motif; Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (243 aa)    
Predicted Functional Partners:
Dalk_5152
KEGG: dol:Dole_1036 type II secretory pathway component PulK-like protein; IMG reference gene:2503010911; PFAM: General secretion pathway protein K.
 
 
 0.988
Dalk_5151
Putative general secretion pathway protein L; PFAM: Fimbrial assembly family protein; KEGG: dol:Dole_1037 fimbrial assembly family protein; IMG reference gene:2503010910; PFAM: General secretion pathway protein L (GspL).
 
  
 0.910
Dalk_5148
KEGG: dol:Dole_1040 PDZ/DHR/GLGF domain-containing protein; IMG reference gene:2503010907; TIGRFAM: general secretion pathway protein C.
 
  
 0.897
Dalk_5155
KEGG: sat:SYN_01552 hypothetical protein; IMG reference gene:2503010914.
  
 
 0.873
Dalk_5144
KEGG: dol:Dole_1042 general secretory pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; IMG reference gene:2503010903; PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: general secretory pathway protein E.
  
 0.842
Dalk_5154
KEGG: dol:Dole_1034 hypothetical protein; IMG reference gene:2503010913; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein I.
       0.801
Dalk_5157
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: dol:Dole_1045 general secretion pathway protein F; IMG reference gene:2503010916; PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F.
 
  
 0.786
Dalk_5145
TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: dol:Dole_1041 general secretion pathway protein D; IMG reference gene:2503010904; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D.
 
  
 0.768
Dalk_0300
PFAM: type II secretion system protein E; response regulator receiver; General secretory system II protein E domain protein; KEGG: gme:Gmet_3473 response regulator receiver domain-containing protein; IMG reference gene:2503005997; PFAM: Response regulator receiver domain; Type II/IV secretion system protein; GSPII_E N-terminal domain.
  
 0.735
Dalk_0957
Putative phytochrome sensor protein; PFAM: type II secretion system protein E; GAF domain protein; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: dol:Dole_1244 putative phytochrome sensor protein; IMG reference gene:2503006658; PFAM: GAF domain; Type II/IV secretion system protein; GSPII_E N-terminal domain.
  
 0.731
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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