STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_5175Ribonuclease Z; Member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; IMG reference gene:2503010934. (335 aa)    
Predicted Functional Partners:
Dalk_5176
KEGG: dol:Dole_2107 hypothetical protein; IMG reference gene:2503010935.
       0.809
Dalk_5174
Hypothetical protein Dalk_5174; IMG reference gene:2503010933.
       0.636
Dalk_5177
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dol:Dole_2106 single-stranded-DNA-specific exonuclease RecJ; IMG reference gene:2503010936; PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ.
   
   0.585
Dalk_5221
Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: dol:Dole_2755 CBS domain-containing protein; IMG reference gene:2503010980; PFAM: DHHA1 domain; DHH family; CBS domain; Poly A polymerase head domain.
  
  
 0.431
Dalk_1920
KEGG: dol:Dole_0703 DNA-directed RNA polymerase, beta' subunit; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; IMG reference gene:2503007632; PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; PPIC-type PPIASE domain; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, [...]
   
   0.428
Dalk_3079
KEGG: sat:SYN_00762 hypothetical protein; IMG reference gene:2503008808.
  
     0.418
Dalk_4989
TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: bba:Bd1602 cobalamin adenosyltransferase; IMG reference gene:2503010748; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase.
    
  0.405
Dalk_2811
KEGG: dol:Dole_1197 hypothetical protein; IMG reference gene:2503008535.
  
     0.400
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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