STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG40183.1Predicted arabinose efflux permease, MFS family. (440 aa)    
Predicted Functional Partners:
SHH43472.1
Protein of unknown function.
  
     0.565
SHG40206.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG.
  
    0.562
SHG67951.1
Hypothetical protein.
 
     0.548
SHG75126.1
Predicted ATP-dependent carboligase, ATP-grasp superfamily.
  
     0.536
SHH24281.1
Alkylhydroperoxidase AhpD family core domain-containing protein.
  
     0.515
SHH23610.1
Alkylhydroperoxidase AhpD family core domain-containing protein.
  
    0.470
SHG77202.1
Lycopene cyclase domain-containing protein.
  
     0.469
SHG83410.1
Peroxiredoxin Q/BCP.
  
     0.444
SHG72663.1
Hypothetical protein.
  
     0.430
SHH02880.1
Parallel beta-helix repeat (two copies).
  
     0.427
Your Current Organism:
Halobaculum gomorrense
NCBI taxonomy Id: 43928
Other names: ATCC 700876, DSM 9297, H. gomorrense, JCM 9908, strain DS2807
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