STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG41360.12-methylcitrate dehydratase PrpD. (484 aa)    
Predicted Functional Partners:
SHG43120.1
Citrate synthase.
  
 
 0.897
SHG47604.1
Isocitrate lyase.
 
  
 0.724
SHG42656.1
2-Methylisocitrate lyase, PEP mutase family.
 
  
 0.723
SHG68357.1
Aconitase.
  
 
 0.625
SHG41334.1
Trans-aconitate methyltransferase.
       0.565
SHH34722.1
propionyl-CoA carboxylase carboxyltransferase subunit.
  
    0.488
SHH61031.1
Acetyl-CoA carboxylase, carboxyltransferase component.
  
    0.488
SHG82647.1
acetyl-CoA synthetase.
 
 
 0.477
SHH10943.1
Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily.
 
    0.474
sucD
succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
     
 0.449
Your Current Organism:
Halobaculum gomorrense
NCBI taxonomy Id: 43928
Other names: ATCC 700876, DSM 9297, H. gomorrense, JCM 9908, strain DS2807
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