Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG52277.1 | nucS | SAMN05443636_0516 | SAMN05443636_0517 | Conserved hypothetical protein. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.420 |
SHG52277.1 | rpl10e | SAMN05443636_0516 | SAMN05443636_0518 | Conserved hypothetical protein. | LSU ribosomal protein L10AE; Belongs to the universal ribosomal protein uL16 family. | 0.624 |
SHH36503.1 | nucS | SAMN05443636_2424 | SAMN05443636_0517 | Putative hydrolase/uncharacterized protein, coenzyme F420 biosynthesis associated. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.464 |
nucS | SHG52277.1 | SAMN05443636_0517 | SAMN05443636_0516 | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | Conserved hypothetical protein. | 0.420 |
nucS | SHH36503.1 | SAMN05443636_0517 | SAMN05443636_2424 | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | Putative hydrolase/uncharacterized protein, coenzyme F420 biosynthesis associated. | 0.464 |
nucS | pcn | SAMN05443636_0517 | SAMN05443636_2627 | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | Monomeric archaeal DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.433 |
nucS | rpl10e | SAMN05443636_0517 | SAMN05443636_0518 | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | LSU ribosomal protein L10AE; Belongs to the universal ribosomal protein uL16 family. | 0.583 |
pcn | nucS | SAMN05443636_2627 | SAMN05443636_0517 | Monomeric archaeal DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.433 |
pcn | rpl10e | SAMN05443636_2627 | SAMN05443636_0518 | Monomeric archaeal DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | LSU ribosomal protein L10AE; Belongs to the universal ribosomal protein uL16 family. | 0.629 |
rpl10e | SHG52277.1 | SAMN05443636_0518 | SAMN05443636_0516 | LSU ribosomal protein L10AE; Belongs to the universal ribosomal protein uL16 family. | Conserved hypothetical protein. | 0.624 |
rpl10e | nucS | SAMN05443636_0518 | SAMN05443636_0517 | LSU ribosomal protein L10AE; Belongs to the universal ribosomal protein uL16 family. | Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family. | 0.583 |
rpl10e | pcn | SAMN05443636_0518 | SAMN05443636_2627 | LSU ribosomal protein L10AE; Belongs to the universal ribosomal protein uL16 family. | Monomeric archaeal DNA polymerase sliding clamp; Sliding clamp subunit that acts as a moving platform for DNA processing. Responsible for tethering the catalytic subunit of DNA polymerase and other proteins to DNA during high-speed replication. | 0.629 |