STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG53070.1Protease-4. (339 aa)    
Predicted Functional Partners:
SHG53098.1
Putative membrane protein.
       0.658
SHG69785.1
Peptidase family M50.
     
 0.623
SHG53027.1
Uncharacterized coiled-coil protein, contains DUF342 domain.
       0.578
SHH16047.1
Hypothetical protein.
 
  
 0.527
SHH57619.1
Hypothetical protein.
   
    0.512
SHH67275.1
DNA polymerase (family 10).
 
     0.500
SHH08918.1
Tetratricopeptide repeat-containing protein.
 
   
 0.467
SHG84054.1
Sugar phosphate isomerase/epimerase.
 
     0.438
thiL
Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
 
     0.433
SHG44173.1
Prephenate dehydratase.
 
     0.430
Your Current Organism:
Halobaculum gomorrense
NCBI taxonomy Id: 43928
Other names: ATCC 700876, DSM 9297, H. gomorrense, JCM 9908, strain DS2807
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