Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG44173.1 | SHG53070.1 | SAMN05443636_0270 | SAMN05443636_0541 | Prephenate dehydratase. | Protease-4. | 0.430 |
SHG44173.1 | SHG84054.1 | SAMN05443636_0270 | SAMN05443636_1246 | Prephenate dehydratase. | Sugar phosphate isomerase/epimerase. | 0.419 |
SHG53027.1 | SHG53070.1 | SAMN05443636_0540 | SAMN05443636_0541 | Uncharacterized coiled-coil protein, contains DUF342 domain. | Protease-4. | 0.578 |
SHG53027.1 | SHG53098.1 | SAMN05443636_0540 | SAMN05443636_0542 | Uncharacterized coiled-coil protein, contains DUF342 domain. | Putative membrane protein. | 0.680 |
SHG53027.1 | SHG69785.1 | SAMN05443636_0540 | SAMN05443636_0813 | Uncharacterized coiled-coil protein, contains DUF342 domain. | Peptidase family M50. | 0.519 |
SHG53070.1 | SHG44173.1 | SAMN05443636_0541 | SAMN05443636_0270 | Protease-4. | Prephenate dehydratase. | 0.430 |
SHG53070.1 | SHG53027.1 | SAMN05443636_0541 | SAMN05443636_0540 | Protease-4. | Uncharacterized coiled-coil protein, contains DUF342 domain. | 0.578 |
SHG53070.1 | SHG53098.1 | SAMN05443636_0541 | SAMN05443636_0542 | Protease-4. | Putative membrane protein. | 0.658 |
SHG53070.1 | SHG69785.1 | SAMN05443636_0541 | SAMN05443636_0813 | Protease-4. | Peptidase family M50. | 0.623 |
SHG53070.1 | SHG84054.1 | SAMN05443636_0541 | SAMN05443636_1246 | Protease-4. | Sugar phosphate isomerase/epimerase. | 0.438 |
SHG53070.1 | SHH08918.1 | SAMN05443636_0541 | SAMN05443636_1740 | Protease-4. | Tetratricopeptide repeat-containing protein. | 0.467 |
SHG53070.1 | SHH16047.1 | SAMN05443636_0541 | SAMN05443636_1996 | Protease-4. | Hypothetical protein. | 0.527 |
SHG53070.1 | SHH57619.1 | SAMN05443636_0541 | SAMN05443636_2905 | Protease-4. | Hypothetical protein. | 0.512 |
SHG53070.1 | SHH67275.1 | SAMN05443636_0541 | SAMN05443636_3146 | Protease-4. | DNA polymerase (family 10). | 0.500 |
SHG53070.1 | thiL | SAMN05443636_0541 | SAMN05443636_0820 | Protease-4. | Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.433 |
SHG53098.1 | SHG53027.1 | SAMN05443636_0542 | SAMN05443636_0540 | Putative membrane protein. | Uncharacterized coiled-coil protein, contains DUF342 domain. | 0.680 |
SHG53098.1 | SHG53070.1 | SAMN05443636_0542 | SAMN05443636_0541 | Putative membrane protein. | Protease-4. | 0.658 |
SHG53098.1 | SHG69785.1 | SAMN05443636_0542 | SAMN05443636_0813 | Putative membrane protein. | Peptidase family M50. | 0.463 |
SHG69785.1 | SHG53027.1 | SAMN05443636_0813 | SAMN05443636_0540 | Peptidase family M50. | Uncharacterized coiled-coil protein, contains DUF342 domain. | 0.519 |
SHG69785.1 | SHG53070.1 | SAMN05443636_0813 | SAMN05443636_0541 | Peptidase family M50. | Protease-4. | 0.623 |
page 1 of 2