Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG44869.1 | SHG53623.1 | SAMN05443636_0290 | SAMN05443636_0558 | Glucokinase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.634 |
SHG44869.1 | SHG69232.1 | SAMN05443636_0290 | SAMN05443636_0797 | Glucokinase. | 2-keto-3-deoxy-phosphogluconate aldolase. | 0.743 |
SHG44869.1 | SHH36105.1 | SAMN05443636_0290 | SAMN05443636_2413 | Glucokinase. | Aspartate-semialdehyde dehydrogenase. | 0.581 |
SHG44869.1 | dapB | SAMN05443636_0290 | SAMN05443636_1453 | Glucokinase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.613 |
SHG45477.1 | SHG69232.1 | SAMN05443636_0309 | SAMN05443636_0797 | Homoserine dehydrogenase. | 2-keto-3-deoxy-phosphogluconate aldolase. | 0.662 |
SHG45477.1 | SHH36105.1 | SAMN05443636_0309 | SAMN05443636_2413 | Homoserine dehydrogenase. | Aspartate-semialdehyde dehydrogenase. | 0.989 |
SHG45477.1 | SHH42441.1 | SAMN05443636_0309 | SAMN05443636_2537 | Homoserine dehydrogenase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.963 |
SHG45477.1 | dapB | SAMN05443636_0309 | SAMN05443636_1453 | Homoserine dehydrogenase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.718 |
SHG45477.1 | lysA | SAMN05443636_0309 | SAMN05443636_1455 | Homoserine dehydrogenase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.859 |
SHG53623.1 | SHG44869.1 | SAMN05443636_0558 | SAMN05443636_0290 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Glucokinase. | 0.634 |
SHG53623.1 | SHG69232.1 | SAMN05443636_0558 | SAMN05443636_0797 | Pyruvate kinase; Belongs to the pyruvate kinase family. | 2-keto-3-deoxy-phosphogluconate aldolase. | 0.872 |
SHG53623.1 | rps17e | SAMN05443636_0558 | SAMN05443636_2369 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Small subunit ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. | 0.875 |
SHG69232.1 | SHG44869.1 | SAMN05443636_0797 | SAMN05443636_0290 | 2-keto-3-deoxy-phosphogluconate aldolase. | Glucokinase. | 0.743 |
SHG69232.1 | SHG45477.1 | SAMN05443636_0797 | SAMN05443636_0309 | 2-keto-3-deoxy-phosphogluconate aldolase. | Homoserine dehydrogenase. | 0.662 |
SHG69232.1 | SHG53623.1 | SAMN05443636_0797 | SAMN05443636_0558 | 2-keto-3-deoxy-phosphogluconate aldolase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.872 |
SHG69232.1 | SHH36105.1 | SAMN05443636_0797 | SAMN05443636_2413 | 2-keto-3-deoxy-phosphogluconate aldolase. | Aspartate-semialdehyde dehydrogenase. | 0.814 |
SHG69232.1 | SHH42441.1 | SAMN05443636_0797 | SAMN05443636_2537 | 2-keto-3-deoxy-phosphogluconate aldolase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.956 |
SHG69232.1 | SHH63556.1 | SAMN05443636_0797 | SAMN05443636_3053 | 2-keto-3-deoxy-phosphogluconate aldolase. | Chorismate mutase. | 0.692 |
SHG69232.1 | dapB | SAMN05443636_0797 | SAMN05443636_1453 | 2-keto-3-deoxy-phosphogluconate aldolase. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.934 |
SHG69232.1 | gatC | SAMN05443636_0797 | SAMN05443636_1522 | 2-keto-3-deoxy-phosphogluconate aldolase. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.669 |
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