Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG43120.1 | SHG52185.1 | SAMN05443636_0236 | SAMN05443636_0512 | Citrate synthase. | Malate dehydrogenase (quinone). | 0.860 |
SHG43120.1 | SHG53623.1 | SAMN05443636_0236 | SAMN05443636_0558 | Citrate synthase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.640 |
SHG43120.1 | SHG76420.1 | SAMN05443636_0236 | SAMN05443636_1007 | Citrate synthase. | Phosphoenolpyruvate carboxylase, type 1. | 0.906 |
SHG43120.1 | SHH10943.1 | SAMN05443636_0236 | SAMN05443636_1810 | Citrate synthase. | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | 0.998 |
SHG43120.1 | eno | SAMN05443636_0236 | SAMN05443636_2919 | Citrate synthase. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.640 |
SHG43120.1 | pgk | SAMN05443636_0236 | SAMN05443636_0508 | Citrate synthase. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.423 |
SHG43120.1 | sucC | SAMN05443636_0236 | SAMN05443636_1149 | Citrate synthase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.993 |
SHG43120.1 | sucD | SAMN05443636_0236 | SAMN05443636_1150 | Citrate synthase. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.939 |
SHG52185.1 | SHG43120.1 | SAMN05443636_0512 | SAMN05443636_0236 | Malate dehydrogenase (quinone). | Citrate synthase. | 0.860 |
SHG52185.1 | SHG73903.1 | SAMN05443636_0512 | SAMN05443636_0932 | Malate dehydrogenase (quinone). | Formyltetrahydrofolate deformylase. | 0.656 |
SHG52185.1 | SHG76420.1 | SAMN05443636_0512 | SAMN05443636_1007 | Malate dehydrogenase (quinone). | Phosphoenolpyruvate carboxylase, type 1. | 0.727 |
SHG52185.1 | SHH10943.1 | SAMN05443636_0512 | SAMN05443636_1810 | Malate dehydrogenase (quinone). | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | 0.752 |
SHG52185.1 | sucC | SAMN05443636_0512 | SAMN05443636_1149 | Malate dehydrogenase (quinone). | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.715 |
SHG52185.1 | sucD | SAMN05443636_0512 | SAMN05443636_1150 | Malate dehydrogenase (quinone). | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.731 |
SHG53623.1 | SHG43120.1 | SAMN05443636_0558 | SAMN05443636_0236 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Citrate synthase. | 0.640 |
SHG53623.1 | SHG76420.1 | SAMN05443636_0558 | SAMN05443636_1007 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoenolpyruvate carboxylase, type 1. | 0.950 |
SHG53623.1 | SHG95857.1 | SAMN05443636_0558 | SAMN05443636_1431 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. | 0.988 |
SHG53623.1 | SHH10943.1 | SAMN05443636_0558 | SAMN05443636_1810 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | 0.965 |
SHG53623.1 | eno | SAMN05443636_0558 | SAMN05443636_2919 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. | 0.999 |
SHG53623.1 | pgk | SAMN05443636_0558 | SAMN05443636_0508 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.922 |
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