STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG98674.1Trk system potassium uptake protein TrkH. (541 aa)    
Predicted Functional Partners:
SHH46155.1
Sodium/proton antiporter, CPA1 family.
 
 
 0.974
SHG76716.1
Trk system potassium uptake protein TrkA.
 
 
 0.916
SHG98727.1
Trk system potassium uptake protein TrkA.
 
 
 0.915
SHG69205.1
Trk system potassium uptake protein TrkA.
 
 
 0.912
SHG98476.1
Trk system potassium uptake protein TrkA.
 
   
 0.827
SHG97905.1
Multicomponent Na+:H+ antiporter subunit A.
     
 0.625
SHG98615.1
Regulatory protein, arsR family.
       0.522
SHG98645.1
Hypothetical protein.
       0.522
SHG82186.1
NADH-quinone oxidoreductase subunit C/D.
     
 0.489
Your Current Organism:
Halobaculum gomorrense
NCBI taxonomy Id: 43928
Other names: ATCC 700876, DSM 9297, H. gomorrense, JCM 9908, strain DS2807
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.