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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH02815.1Ferredoxin. (255 aa)    
Predicted Functional Partners:
SHG82186.1
NADH-quinone oxidoreductase subunit C/D.
  
 
 0.999
SHH09010.1
Nitrogen fixation protein NifU.
  
 0.775
SHG82242.1
NADH-quinone oxidoreductase subunit I.
  
 
 0.741
SHG82401.1
NADH dehydrogenase subunit M.
    
 
 0.716
SHG82125.1
NADH-quinone oxidoreductase subunit A.
   
 
 0.712
SHG46392.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
 
 0.705
SHG82155.1
NADH dehydrogenase subunit B; Belongs to the complex I 20 kDa subunit family.
  
   0.697
SHG82210.1
NADH dehydrogenase subunit H.
   
 
 0.696
SHG82434.1
NADH dehydrogenase subunit N.
    
 
 0.694
SHG46458.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
 0.691
Your Current Organism:
Halobaculum gomorrense
NCBI taxonomy Id: 43928
Other names: ATCC 700876, DSM 9297, H. gomorrense, JCM 9908, strain DS2807
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