STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cetZ-2Cell division GTPase FtsZ; Involved in cell shape control; Belongs to the CetZ family. (398 aa)    
Predicted Functional Partners:
SHH70244.1
Hypothetical protein.
  
     0.733
SHH22741.1
Helix-turn-helix domain-containing protein.
  
     0.686
SHG45153.1
Hypothetical protein.
  
 
 0.685
SHH13249.1
Helix-turn-helix domain-containing protein.
  
     0.655
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
 
  
 0.627
SHH63343.1
ABC-type Na+ efflux pump, permease component.
  
     0.613
SHH31619.1
Flagellar protein FlaJ.
  
     0.590
SHG53929.1
DNA polymerase I.
  
     0.581
SHG93050.1
Tubulin/FtsZ family, GTPase domain.
  
     0.581
cofC
Phospholactate guanylyltransferase; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor; Belongs to the CofC family.
 
     0.570
Your Current Organism:
Halobaculum gomorrense
NCBI taxonomy Id: 43928
Other names: ATCC 700876, DSM 9297, H. gomorrense, JCM 9908, strain DS2807
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