Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG77020.1 | SHH34863.1 | SAMN05443636_1023 | SAMN05443636_2378 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Hypothetical protein. | 0.489 |
SHG77020.1 | ndk | SAMN05443636_1023 | SAMN05443636_2363 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.975 |
SHG77020.1 | pyrG | SAMN05443636_1023 | SAMN05443636_1118 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.702 |
SHG77020.1 | thyA | SAMN05443636_1023 | SAMN05443636_3227 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.943 |
SHG77020.1 | tmk | SAMN05443636_1023 | SAMN05443636_1021 | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Thymidylate kinase. | 0.971 |
SHH21571.1 | SHH34863.1 | SAMN05443636_2062 | SAMN05443636_2378 | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | Hypothetical protein. | 0.443 |
SHH21571.1 | ndk | SAMN05443636_2062 | SAMN05443636_2363 | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.593 |
SHH21571.1 | pyrG | SAMN05443636_2062 | SAMN05443636_1118 | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.658 |
SHH34830.1 | SHH34863.1 | SAMN05443636_2377 | SAMN05443636_2378 | Enoyl-CoA hydratase/carnithine racemase. | Hypothetical protein. | 0.580 |
SHH34830.1 | SHH34897.1 | SAMN05443636_2377 | SAMN05443636_2379 | Enoyl-CoA hydratase/carnithine racemase. | Methionine synthase (B12-independent). | 0.435 |
SHH34830.1 | SHH34931.1 | SAMN05443636_2377 | SAMN05443636_2380 | Enoyl-CoA hydratase/carnithine racemase. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase. | 0.435 |
SHH34863.1 | SHG77020.1 | SAMN05443636_2378 | SAMN05443636_1023 | Hypothetical protein. | Ribonucleoside-diphosphate reductase class II; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | 0.489 |
SHH34863.1 | SHH21571.1 | SAMN05443636_2378 | SAMN05443636_2062 | Hypothetical protein. | 8-oxo-dGTP pyrophosphatase MutT, NUDIX family. | 0.443 |
SHH34863.1 | SHH34830.1 | SAMN05443636_2378 | SAMN05443636_2377 | Hypothetical protein. | Enoyl-CoA hydratase/carnithine racemase. | 0.580 |
SHH34863.1 | SHH34897.1 | SAMN05443636_2378 | SAMN05443636_2379 | Hypothetical protein. | Methionine synthase (B12-independent). | 0.455 |
SHH34863.1 | SHH34931.1 | SAMN05443636_2378 | SAMN05443636_2380 | Hypothetical protein. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase. | 0.455 |
SHH34863.1 | SHH68386.1 | SAMN05443636_2378 | SAMN05443636_3192 | Hypothetical protein. | dTDP-4-dehydrorhamnose reductase. | 0.514 |
SHH34863.1 | ndk | SAMN05443636_2378 | SAMN05443636_2363 | Hypothetical protein. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. | 0.504 |
SHH34863.1 | pyrG | SAMN05443636_2378 | SAMN05443636_1118 | Hypothetical protein. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.468 |
SHH34863.1 | thyA | SAMN05443636_2378 | SAMN05443636_3227 | Hypothetical protein. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.532 |
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