Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG73839.1 | SHH57563.1 | SAMN05443636_0930 | SAMN05443636_2903 | D-lactate dehydrogenase (cytochrome). | Nickel-dependent lactate racemase. | 0.699 |
SHG79693.1 | SHH12955.1 | SAMN05443636_1108 | SAMN05443636_1887 | Hypothetical protein; Belongs to the LarC family. | Hypothetical protein. | 0.936 |
SHG79693.1 | SHH44534.1 | SAMN05443636_1108 | SAMN05443636_2602 | Hypothetical protein; Belongs to the LarC family. | Uncharacterized protein. | 0.944 |
SHG79693.1 | SHH57563.1 | SAMN05443636_1108 | SAMN05443636_2903 | Hypothetical protein; Belongs to the LarC family. | Nickel-dependent lactate racemase. | 0.843 |
SHG84252.1 | SHG93717.1 | SAMN05443636_1252 | SAMN05443636_1366 | Aldehyde dehydrogenase (NAD+). | Acetyltransferase. | 0.891 |
SHG84252.1 | SHH10943.1 | SAMN05443636_1252 | SAMN05443636_1810 | Aldehyde dehydrogenase (NAD+). | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | 0.653 |
SHG84252.1 | SHH35833.1 | SAMN05443636_1252 | SAMN05443636_2405 | Aldehyde dehydrogenase (NAD+). | FAD/FMN-containing dehydrogenase. | 0.401 |
SHG84252.1 | SHH57563.1 | SAMN05443636_1252 | SAMN05443636_2903 | Aldehyde dehydrogenase (NAD+). | Nickel-dependent lactate racemase. | 0.519 |
SHG93717.1 | SHG84252.1 | SAMN05443636_1366 | SAMN05443636_1252 | Acetyltransferase. | Aldehyde dehydrogenase (NAD+). | 0.891 |
SHG93717.1 | SHH10943.1 | SAMN05443636_1366 | SAMN05443636_1810 | Acetyltransferase. | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | 0.598 |
SHG93717.1 | SHH57563.1 | SAMN05443636_1366 | SAMN05443636_2903 | Acetyltransferase. | Nickel-dependent lactate racemase. | 0.592 |
SHG93717.1 | SHH58415.1 | SAMN05443636_1366 | SAMN05443636_2932 | Acetyltransferase. | Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase. | 0.891 |
SHH10943.1 | SHG84252.1 | SAMN05443636_1810 | SAMN05443636_1252 | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | Aldehyde dehydrogenase (NAD+). | 0.653 |
SHH10943.1 | SHG93717.1 | SAMN05443636_1810 | SAMN05443636_1366 | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | Acetyltransferase. | 0.598 |
SHH10943.1 | SHH35833.1 | SAMN05443636_1810 | SAMN05443636_2405 | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | FAD/FMN-containing dehydrogenase. | 0.402 |
SHH10943.1 | SHH57563.1 | SAMN05443636_1810 | SAMN05443636_2903 | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | Nickel-dependent lactate racemase. | 0.683 |
SHH10943.1 | SHH58415.1 | SAMN05443636_1810 | SAMN05443636_2932 | Malate dehydrogenase (NAD); Belongs to the LDH/MDH superfamily. | Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase. | 0.604 |
SHH12955.1 | SHG79693.1 | SAMN05443636_1887 | SAMN05443636_1108 | Hypothetical protein. | Hypothetical protein; Belongs to the LarC family. | 0.936 |
SHH12955.1 | SHH44534.1 | SAMN05443636_1887 | SAMN05443636_2602 | Hypothetical protein. | Uncharacterized protein. | 0.976 |
SHH12955.1 | SHH57563.1 | SAMN05443636_1887 | SAMN05443636_2903 | Hypothetical protein. | Nickel-dependent lactate racemase. | 0.924 |
page 1 of 3