Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG43120.1 | SHG76379.1 | SAMN05443636_0236 | SAMN05443636_1006 | Citrate synthase. | Rieske Fe-S protein. | 0.534 |
SHG43120.1 | SHG82186.1 | SAMN05443636_0236 | SAMN05443636_1192 | Citrate synthase. | NADH-quinone oxidoreductase subunit C/D. | 0.968 |
SHG43120.1 | SHG82242.1 | SAMN05443636_0236 | SAMN05443636_1194 | Citrate synthase. | NADH-quinone oxidoreductase subunit I. | 0.800 |
SHG43120.1 | SHH69093.1 | SAMN05443636_0236 | SAMN05443636_3205 | Citrate synthase. | Succinate dehydrogenase subunit A. | 0.978 |
SHG43120.1 | SHH69113.1 | SAMN05443636_0236 | SAMN05443636_3206 | Citrate synthase. | Succinate dehydrogenase subunit B. | 0.984 |
SHG43120.1 | SHH69130.1 | SAMN05443636_0236 | SAMN05443636_3207 | Citrate synthase. | Succinate dehydrogenase subunit D. | 0.747 |
SHG43120.1 | SHH69153.1 | SAMN05443636_0236 | SAMN05443636_3208 | Citrate synthase. | Succinate dehydrogenase subunit C. | 0.854 |
SHG43120.1 | fumC | SAMN05443636_0236 | SAMN05443636_2881 | Citrate synthase. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.959 |
SHG43120.1 | sucC | SAMN05443636_0236 | SAMN05443636_1149 | Citrate synthase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.993 |
SHG43120.1 | sucD | SAMN05443636_0236 | SAMN05443636_1150 | Citrate synthase. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.939 |
SHG76379.1 | SHG43120.1 | SAMN05443636_1006 | SAMN05443636_0236 | Rieske Fe-S protein. | Citrate synthase. | 0.534 |
SHG76379.1 | SHG82186.1 | SAMN05443636_1006 | SAMN05443636_1192 | Rieske Fe-S protein. | NADH-quinone oxidoreductase subunit C/D. | 0.999 |
SHG76379.1 | SHG82242.1 | SAMN05443636_1006 | SAMN05443636_1194 | Rieske Fe-S protein. | NADH-quinone oxidoreductase subunit I. | 0.999 |
SHG76379.1 | SHH69093.1 | SAMN05443636_1006 | SAMN05443636_3205 | Rieske Fe-S protein. | Succinate dehydrogenase subunit A. | 0.978 |
SHG76379.1 | SHH69113.1 | SAMN05443636_1006 | SAMN05443636_3206 | Rieske Fe-S protein. | Succinate dehydrogenase subunit B. | 0.989 |
SHG76379.1 | SHH69153.1 | SAMN05443636_1006 | SAMN05443636_3208 | Rieske Fe-S protein. | Succinate dehydrogenase subunit C. | 0.955 |
SHG76379.1 | fumC | SAMN05443636_1006 | SAMN05443636_2881 | Rieske Fe-S protein. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.515 |
SHG76379.1 | sucC | SAMN05443636_1006 | SAMN05443636_1149 | Rieske Fe-S protein. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.626 |
SHG76379.1 | sucD | SAMN05443636_1006 | SAMN05443636_1150 | Rieske Fe-S protein. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.784 |
SHG82186.1 | SHG43120.1 | SAMN05443636_1192 | SAMN05443636_0236 | NADH-quinone oxidoreductase subunit C/D. | Citrate synthase. | 0.968 |
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