STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH70338.1Amino acid transporter. (534 aa)    
Predicted Functional Partners:
SHG46720.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
    
 0.674
SHG91166.1
Glycosidase.
    
 0.674
SHH20086.1
Glycosidase.
    
 0.674
SHH70313.1
N-glycosylase/DNA lyase.
       0.671
SHH46155.1
Sodium/proton antiporter, CPA1 family.
   
 
 0.657
SHH70357.1
Small-conductance mechanosensitive channel.
       0.565
SHH70382.1
MFS transporter, OFA family, oxalate/formate antiporter.
  
   0.456
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
 
 0.401
Your Current Organism:
Halobaculum gomorrense
NCBI taxonomy Id: 43928
Other names: ATCC 700876, DSM 9297, H. gomorrense, JCM 9908, strain DS2807
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