STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0037PFAM: PSP1 domain protein; KEGG: signal peptidase-like protein. (275 aa)    
Predicted Functional Partners:
rny
Metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
  
 0.866
Bsel_0036
KEGG: geo:Geob_2151 DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit.
  
   0.825
Bsel_0038
Protein of unknown function DUF972; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.817
Bsel_0035
PFAM: protein of unknown function DUF970.
  
    0.758
Bsel_0039
PFAM: methyltransferase small; KEGG: dol:Dole_0543 methyltransferase small.
 
    0.675
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.646
Bsel_1632
PFAM: protein of unknown function DUF1333; KEGG: GM19576 gene product from transcript GM19576-RA; Belongs to the UPF0342 family.
 
   
 0.645
Bsel_0040
KEGG: shm:Shewmr7_0131 excinuclease ABC subunit C; PFAM: Excinuclease ABC C subunit domain protein; SMART: Excinuclease ABC C subunit domain protein.
  
    0.617
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.595
Bsel_0033
PFAM: Orn/Lys/Arg decarboxylase major region; KEGG: Os03g0848100; hypothetical protein.
  
    0.566
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.