STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0164PFAM: Bile acid:sodium symporter; KEGG: oan:Oant_1227 bile acid:sodium symporter. (319 aa)    
Predicted Functional Partners:
Bsel_0165
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
  
 0.451
Bsel_0159
KEGG: lhk:LHK_01305 xanthine/uracil/vitamin C permease.
       0.447
Bsel_0160
Hypothetical protein; KEGG: lhk:LHK_00981 YlbF.
       0.447
Bsel_0161
PFAM: FdrA family protein; KEGG: ecd:ECDH10B_0307 acyl-CoA synthetase.
       0.447
Bsel_0162
PFAM: protein of unknown function DUF1116; KEGG: lhk:LHK_01303 DUF1116 domain containing protein.
       0.447
Bsel_0163
TIGRFAM: carbamate kinase; KEGG: eic:NT01EI_3529 carbamate kinase, putative; PFAM: aspartate/glutamate/uridylate kinase; Belongs to the carbamate kinase family.
       0.447
Bsel_0158
PFAM: isochorismatase hydrolase; KEGG: lhk:LHK_01309 isochorismatase hydrolase.
       0.418
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
    0.400
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.