STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0165Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. (561 aa)    
Predicted Functional Partners:
Bsel_1024
Hypothetical protein.
    
 0.959
Bsel_0170
KEGG: reu:Reut_B5835 aldehyde dehydrogenase (acceptor); TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase.
 
 
 0.947
Bsel_2396
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.802
Bsel_2113
Cytochrome b subunit of the bc complex-like protein; Component of the menaquinol-cytochrome c reductase complex.
  
 
 0.797
Bsel_2118
SMART: Tetratricopeptide repeat; KEGG: TPR Domain containing protein.
   
 0.777
Bsel_2444
KEGG: cbg:CbuG_1449 tetratricopeptide repeat family protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat.
    
 0.775
Bsel_1079
PFAM: cytochrome c class I; KEGG: smt:Smal_1045 cytochrome c class I.
  
 
 0.760
Bsel_2343
PFAM: cytochrome c class I; KEGG: cco:CCC13826_0726 cytochrome c oxidase, Cbb3-type, subunit III.
  
 
 0.760
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
 
  
   0.605
Bsel_1569
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA.
  
  
 0.548
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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