STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0216Hypothetical protein; KEGG: sfr:Sfri_1781 UspA domain-containing protein. (116 aa)    
Predicted Functional Partners:
Bsel_2882
PFAM: SurA domain; KEGG: maq:Maqu_1836 PpiC-type peptidyl-prolyl cis-trans isomerase.
  
     0.504
Bsel_0214
Hypothetical protein; KEGG: midasin.
       0.492
Bsel_0215
KEGG: mxa:MXAN_4309 ECF subfamily RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein.
       0.492
Bsel_2919
Hypothetical protein.
  
     0.489
Bsel_1200
KEGG: psa:PST_2084 hypothetical protein.
  
     0.480
Bsel_1959
KEGG: psa:PST_2084 hypothetical protein.
  
     0.462
Bsel_3097
PFAM: Auxin Efflux Carrier; KEGG: gem:GM21_2895 auxin efflux carrier.
  
     0.423
Bsel_1321
KEGG: noc:Noc_2887 hypothetical protein.
  
     0.408
Bsel_0217
Hypothetical protein.
       0.403
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.