STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0338PFAM: protein of unknown function DUF624; KEGG: GPT1; GABA/polyamine transporter. (221 aa)    
Predicted Functional Partners:
Bsel_0339
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: rlt:Rleg2_5890 alpha-N-arabinofuranosidase.
 
     0.825
Bsel_0335
PFAM: extracellular solute-binding protein family 1; KEGG: rlg:Rleg_6112 extracellular solute-binding protein family 1.
 
    0.787
Bsel_0336
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_0127 sugar ABC transporter.
 
    0.773
Bsel_0337
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xfm:Xfasm12_1605 ABC transporter sugar permease.
 
  
 0.744
Bsel_0340
Alpha-N-arabinofuranosidase; KEGG: eca:ECA3793 putatuve glycosysl hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
       0.684
Bsel_2832
PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein.
 
    0.613
Bsel_0341
KEGG: pmu:PM1244 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein.
       0.546
Bsel_0288
PFAM: ABC-2 type transporter; KEGG: geo:Geob_1784 ABC-2 type transporter.
  
     0.537
Bsel_3082
PFAM: NLP/P60 protein; KEGG: azo:azo2203 putative lipoprotein precusor.
  
     0.521
Bsel_0851
PFAM: NLP/P60 protein; KEGG: mei:Msip34_0442 NLP/P60 protein.
  
     0.519
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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