STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0339PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: rlt:Rleg2_5890 alpha-N-arabinofuranosidase. (502 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.959
Bsel_0340
Alpha-N-arabinofuranosidase; KEGG: eca:ECA3793 putatuve glycosysl hydrolase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.921
Bsel_0335
PFAM: extracellular solute-binding protein family 1; KEGG: rlg:Rleg_6112 extracellular solute-binding protein family 1.
 
  
 0.883
Bsel_0338
PFAM: protein of unknown function DUF624; KEGG: GPT1; GABA/polyamine transporter.
 
     0.825
Bsel_0334
Arabinan endo-1,5-alpha-L-arabinosidase; KEGG: scl:sce1485 putative Beta-xylosidase; PFAM: glycoside hydrolase family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.803
Bsel_0336
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ara:Arad_0127 sugar ABC transporter.
 
    0.798
Bsel_0337
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: xfm:Xfasm12_1605 ABC transporter sugar permease.
 
  
 0.742
araB
L-ribulokinase; KEGG: scl:sce3311 ribulokinase; TIGRFAM: L-ribulokinase; PFAM: Carbohydrate kinase, FGGY-like.
 
  
 0.739
Bsel_0341
KEGG: pmu:PM1244 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein.
 
  
 0.735
Bsel_0345
Glycerol-1-phosphate dehydrogenase (NAD(P)(+)); KEGG: aph:APH_1193 AraM domain-containing protein; PFAM: 3-dehydroquinate synthase.
 
  
 0.702
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.