STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0482KEGG: tgr:Tgr7_2678 hypothetical protein. (295 aa)    
Predicted Functional Partners:
Bsel_0481
PFAM: peptidase C60 sortase A and B; KEGG: shn:Shewana3_2409 sortase family protein.
 
    0.941
Bsel_2209
Membrane protein-like protein; KEGG: gsu:GSU1898 hypothetical protein.
  
     0.734
Bsel_2210
PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: mxa:MXAN_0902 acyltransferase domain-containing protein.
  
    0.705
Bsel_1484
TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: gme:Gmet_0987 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein.
   
 
 0.665
Bsel_2219
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: sfu:Sfum_0517 methyltransferase type 12.
  
   
 0.664
Bsel_0837
Hypothetical protein.
   
 
 0.632
Bsel_2034
PFAM: FAD dependent oxidoreductase; KEGG: hypothetical protein; K09835 carotenoid isomerase.
  
     0.592
Bsel_1649
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; PASTA domain containing protein; Penicillin-binding protein dimerisation domain; KEGG: sat:SYN_01739 division specific D,D-transpeptidase / cell division protein; SMART: PASTA domain containing protein.
  
 
 0.574
Bsel_0480
PFAM: major facilitator superfamily MFS_1; KEGG: rlt:Rleg2_0160 major facilitator superfamily MFS_1.
  
    0.564
Bsel_2731
PFAM: HEAT domain containing protein; KEGG: mlo:mlr6693 hypothetical protein.
  
     0.554
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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