STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0522PFAM: Proline dehydrogenase; KEGG: mxa:MXAN_7405 proline dehydrogenase. (313 aa)    
Predicted Functional Partners:
rocA
KEGG: geo:Geob_2608 delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. RocA subfamily.
 0.997
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.922
proC-2
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 0.922
Bsel_1005
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.848
Bsel_0170
KEGG: reu:Reut_B5835 aldehyde dehydrogenase (acceptor); TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase.
 
 0.820
Bsel_2947
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)); KEGG: hypothetical protein; PFAM: Aldehyde Dehydrogenase.
 
 
 0.797
Bsel_0523
Arginase; KEGG: hypothetical protein; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
  
 0.795
Bsel_2055
PFAM: Aldehyde Dehydrogenase; KEGG: gsu:GSU1108 aldehyde dehydrogenase family protein.
 
 
 0.777
rocD
Ornithine aminotransferase; Catalyzes the interconversion of ornithine to glutamate semialdehyde.
 
  
 0.756
Bsel_1353
TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: bba:Bd0562 hypothetical protein; PFAM: Citrate synthase.
   
  
 0.591
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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