STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0573PFAM: Amidase; KEGG: hypothetical protein LOC100240917; Belongs to the amidase family. (391 aa)    
Predicted Functional Partners:
gatB
glutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
 
 
 0.973
gatC
glutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
 
 
 0.929
Bsel_2620
PFAM: Amidase; KEGG: ilo:IL1971 amidase.
  
  
 
0.927
Bsel_2000
PFAM: Amidase; KEGG: dol:Dole_2535 amidase; Belongs to the amidase family.
  
  
 
0.922
Bsel_2856
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hypothetical protein.
  
 
 0.907
Bsel_2781
PFAM: Aldehyde Dehydrogenase; KEGG: sat:SYN_00265 NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.905
Bsel_2777
PFAM: acylphosphatase; KEGG: cbg:CbuG_2003 acylphosphatase.
    
  0.903
Bsel_3106
PFAM: coenzyme A transferase; KEGG: bxe:Bxe_B1889 putative glutaconate CoA-transferase, subunit B.
     
  0.900
Bsel_3107
PFAM: coenzyme A transferase; KEGG: bpt:Bpet3678 putative glutaconate CoA transferase subunit A.
     
  0.900
Bsel_0158
PFAM: isochorismatase hydrolase; KEGG: lhk:LHK_01309 isochorismatase hydrolase.
     0.869
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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