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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0803TIGRFAM: phage minor structural protein. (465 aa)    
Predicted Functional Partners:
Bsel_0802
TIGRFAM: phage tail component.
 
   0.974
Bsel_0801
KEGG: pmr:PMI1973 phage tail fiber protein (tape measure protein); TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region.
 
    0.898
Bsel_2995
TIGRFAM: phage tail component.
 
   0.891
Bsel_0805
KEGG: dvl:Dvul_1067 toxin secretion/phage lysis holin; TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis.
 
    0.888
Bsel_2996
KEGG: pmr:PMI1973 phage tail fiber protein (tape measure protein); TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region.
 
 
 0.885
Bsel_0806
PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Sporulation domain protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2.
 
     0.879
Bsel_0798
TIGRFAM: phage major tail protein, phi13 family.
 
    0.876
Bsel_0794
Hypothetical protein; KEGG: mes:Meso_1889 uncharacterized phage protein.
  
 
 0.800
Bsel_0790
KEGG: hch:HCH_04555 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein.
 
    0.783
Bsel_0796
KEGG: asu:Asuc_1243 HK97 family phage protein; TIGRFAM: phage protein, HK97 gp10 family; PFAM: TP901-1 ORF40 family protein.
 
     0.775
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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