STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0897KEGG: efe:EFER_1529 putative TRAP dicarboxylate transporter, DctM subunit precursor, putative transmembrane protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter. (423 aa)    
Predicted Functional Partners:
Bsel_0898
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sfu:Sfum_3144 tripartite ATP-independent periplasmic transporter DctQ.
 
 
 0.978
Bsel_0899
KEGG: pna:Pnap_4043 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria.
  
 0.910
Bsel_1187
KEGG: aeh:Mlg_1941 TRAP dicarboxylate transporter-DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria.
 
  
 0.829
Bsel_1185
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: csa:Csal_3138 tripartite ATP-independent periplasmic transporter DctQ.
 
 
 0.792
Bsel_0439
PFAM: conserved hypothetical protein; KEGG: bpt:Bpet3357 putative secreted protein.
  
     0.449
Bsel_0900
TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: eta:ETA_26160 N-carbamoyl-L-amino acid hydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.440
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.