STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsDRbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (129 aa)    
Predicted Functional Partners:
rbsK-2
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.985
Bsel_0912
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: lhk:LHK_01714 RbsB.
 
  
 0.980
Bsel_0911
PFAM: inner-membrane translocator; KEGG: cvi:CV_3017 D-ribose transport system permease protein.
 
  
 0.976
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
  
 0.949
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.939
Bsel_3122
PFAM: inner-membrane translocator; KEGG: yen:YE2763 ribose transport system, permease protein.
 
  
 0.900
Bsel_0907
Transcriptional regulator, LacI family; KEGG: vha:VIBHAR_06141 hypothetical protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
 
  
 0.832
Bsel_3123
KEGG: ypi:YpsIP31758_2423 ribose ABC transporter, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.820
Bsel_3124
KEGG: esa:ESA_00809 hypothetical protein.
 
  
 0.813
Bsel_2513
PFAM: PfkB domain protein; Helix-turn-helix type 11 domain protein; KEGG: rle:pRL120174 PfkB family kinase; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.740
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.