STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0928PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: fta:FTA_0364 deoxyribodipyrimidine photolyase-related protein. (543 aa)    
Predicted Functional Partners:
Bsel_0155
KEGG: maq:Maqu_3105 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding.
 
   
 0.804
Bsel_0595
KEGG: ilo:IL2050 hypothetical protein.
 
     0.776
Bsel_0596
TIGRFAM: cryptochrome, DASH family; KEGG: cry-dash; cryptochrome DASH; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
 
   
 0.772
Bsel_2779
KEGG: dar:Daro_3894 deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein.
 
   
 0.714
Bsel_0756
PFAM: FAD dependent oxidoreductase; KEGG: bmj:BMULJ_05680 hypothetical protein.
 
     0.655
Bsel_2589
PFAM: protein of unknown function DUF897; KEGG: psa:PST_0188 sodium bicarbonate cotransporter.
  
     0.627
Bsel_0929
Transcriptional regulator, DeoR family; KEGG: smt:Smal_3818 DNA-binding transcriptional regulator AgaR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.
       0.532
Bsel_0930
1-phosphofructokinase; KEGG: dat:HRM2_08650 PfkB1; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
       0.532
Bsel_0931
KEGG: vpa:VPA1424 PTS system, fructose-specific IIABC component; TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2.
       0.532
Bsel_0592
PFAM: DoxX family protein; KEGG: pca:Pcar_1345 hypothetical protein.
  
     0.501
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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