STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_0980PFAM: Acetyl xylan esterase; KEGG: hypothetical protein. (318 aa)    
Predicted Functional Partners:
Bsel_0979
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
       0.596
Bsel_0448
PFAM: extracellular solute-binding protein family 1; KEGG: hypothetical protein.
 
     0.569
Bsel_0339
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: rlt:Rleg2_5890 alpha-N-arabinofuranosidase.
 
  
 0.501
Bsel_2936
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: amc:MADE_00428 twin-arginine translocation pathway signal.
 
     0.488
Bsel_2282
KEGG: smt:Smal_2940 hypothetical protein.
  
     0.434
Bsel_1936
KEGG: scl:sce5394 glycerol-1-phosphate dehydrogenase (NAD(P)(+)); PFAM: 3-dehydroquinate synthase.
  
     0.416
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.