STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1024Hypothetical protein. (144 aa)    
Predicted Functional Partners:
Bsel_1026
PFAM: FlgN family protein.
 
  
 0.984
Bsel_1025
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: gur:Gura_3121 hypothetical protein.
 
 
 0.983
Bsel_1279
KEGG: gur:Gura_2297 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily.
   
 0.903
Bsel_1029
Hypothetical protein.
 
  
 0.897
Bsel_1027
KEGG: dde:Dde_3152 flagellar hook-associated protein; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
 
  
 0.892
Bsel_1028
KEGG: hha:Hhal_0510 flagellar hook-associated protein 3; TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein.
 
  
 0.874
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.867
Bsel_2444
KEGG: cbg:CbuG_1449 tetratricopeptide repeat family protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_3; SMART: Tetratricopeptide repeat.
  
 0.858
Bsel_2118
SMART: Tetratricopeptide repeat; KEGG: TPR Domain containing protein.
  
 0.857
rpmD
KEGG: sat:SYN_01593 50S ribosomal protein L30P; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30.
   
  0.852
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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