STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1498PFAM: NAD(P)H dehydrogenase (quinone); KEGG: apa:APP7_1501 putative NAD(P)H oxidoreductase. (193 aa)    
Predicted Functional Partners:
Bsel_0429
Flavoprotein WrbA; KEGG: net:Neut_0876 flavodoxin/nitric oxide synthase; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; Belongs to the WrbA family.
    
 0.921
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
     
  0.900
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.893
Bsel_1497
Diguanylate phosphodiesterase; KEGG: abu:Abu_0830 EAL domain-containing protein; PFAM: EAL domain protein; SMART: EAL domain protein.
       0.676
Bsel_2046
PFAM: aminotransferase class I and II; KEGG: lpc:LPC_0093 aspartate aminotransferase A.
  
    0.585
Bsel_1196
PFAM: aminotransferase class I and II; KEGG: pla:Plav_2300 aspartate aminotransferase.
   
    0.530
Bsel_2096
PFAM: aminotransferase class I and II; KEGG: gur:Gura_2501 aminotransferase, class I and II.
   
    0.530
Bsel_0669
KEGG: ypi:YpsIP31758_1310 pyridine nucleotide-disulphide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SirA family protein; SMART: Rhodanese domain protein; Belongs to the sulfur carrier protein TusA family.
   
  
 0.498
Bsel_3234
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bba:Bd1175 nucleoside-diphosphate-sugar epimerase.
 
    0.480
Bsel_1496
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: avi:Avi_4174 4A-hydroxytetrahydrobiopterin dehydratase.
       0.446
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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