STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1503KEGG: sfu:Sfum_3721 TRAP transporter, 4TM/12TM fusion protein; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit. (652 aa)    
Predicted Functional Partners:
Bsel_1504
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: oan:Oant_2429 TRAP transporter solute receptor TAXI family protein.
 
    0.905
Bsel_0434
TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: par:Psyc_0746 TRAP-T family transporter periplasmic substrate binding subunit.
 
    0.843
Bsel_0435
PFAM: Domain of unknown function DUF1850; KEGG: csa:Csal_0387 hypothetical protein.
 
    0.717
Bsel_0439
PFAM: conserved hypothetical protein; KEGG: bpt:Bpet3357 putative secreted protein.
  
     0.501
Bsel_0899
KEGG: pna:Pnap_4043 TRAP dicarboxylate transporter, DctP subunit; TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria.
  
     0.462
Bsel_0898
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sfu:Sfum_3144 tripartite ATP-independent periplasmic transporter DctQ.
  
     0.455
Bsel_1186
KEGG: aeh:Mlg_1943 TRAP dicarboxylate transporter, DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit.
  
     0.421
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.