STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1571Choline/carnitine/betaine transporter; KEGG: cvi:CV_4302 high-affinity choline transport protein; TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; Belongs to the BCCT transporter (TC 2.A.15) family. (506 aa)    
Predicted Functional Partners:
Bsel_1569
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA.
     
 0.501
Bsel_1570
Isocitrate lyase; KEGG: acp:A2cp1_3198 malate synthase A; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase.
       0.493
Bsel_1572
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bja:blr2557 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.468
Bsel_1573
Hypothetical protein.
       0.468
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.