STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1703KEGG: dvl:Dvul_1226 DegV family protein; TIGRFAM: degV family protein; PFAM: DegV family protein. (287 aa)    
Predicted Functional Partners:
Bsel_1702
KEGG: dde:Dde_1644 DegV family protein; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: Dak phosphatase.
 
 0.990
Bsel_1701
PFAM: protein of unknown function DUF322.
 
    0.771
Bsel_2602
degV family protein; KEGG: lpf:lpl0258 hypothetical protein; TIGRFAM: degV family protein; PFAM: DegV family protein; Dak phosphatase.
 
  
0.563
Bsel_1704
TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; KEGG: ppw:PputW619_3319 L-serine ammonia-lyase; PFAM: serine dehydratase beta chain; amino acid-binding ACT domain protein.
       0.532
Bsel_1705
TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; KEGG: dde:Dde_3111 L-serine ammonia-lyase; PFAM: serine dehydratase alpha chain.
       0.511
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.405
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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