STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1908KEGG: pfl:PFL_5702 CBS domain-containing protein; PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding; cyclic nucleotide-binding; CBS domain containing protein; SMART: cyclic nucleotide-binding. (638 aa)    
Predicted Functional Partners:
Bsel_1909
SMART: Exonuclease; TIGRFAM: DNA polymerase III, epsilon subunit; KEGG: lch:Lcho_0238 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III.
 
     0.899
Bsel_1907
KEGG: mxa:MXAN_3832 hypothetical protein.
       0.730
Bsel_1906
KEGG: sat:SYN_00383 DEAD/deah box helicase; PFAM: DEAD/DEAH box helicase domain protein; Protein of unknown function DUF1998; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein.
       0.639
Bsel_2723
KEGG: gme:Gmet_0147 glutamate synthase (ferredoxin); PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamine amidotransferase class-II.
     
 0.578
Bsel_3062
KEGG: dal:Dalk_4314 hypothetical protein.
  
     0.566
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.541
Bsel_0657
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: scl:sce6798 anti-anti sigma factor protein.
 
     0.476
Bsel_2728
Hypothetical protein.
  
     0.448
Bsel_1937
KEGG: rfr:Rfer_3777 DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
 
     0.445
Bsel_2919
Hypothetical protein.
  
     0.436
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.