STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1920PFAM: CoA-binding domain protein; KEGG: tbd:Tbd_2525 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Bsel_1918
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; binding-protein-dependent transport systems inner membrane component; KEGG: aap:NT05HA_1064 glycine betaine.
       0.731
Bsel_1917
KEGG: ara:Arad_8385 proline/glycine betaine ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.710
Bsel_1916
Carboxypeptidase Taq; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
 
     0.701
Bsel_1919
PFAM: UspA domain protein; KEGG: dvm:DvMF_1529 UspA domain protein.
       0.699
Bsel_2716
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: sfu:Sfum_1722 ferric uptake regulator family protein; Belongs to the Fur family.
  
    0.612
parC
DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 2 subfamily.
       0.542
Bsel_1212
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: pca:Pcar_1719 cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase.
      0.536
parE
DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 2 subfamily.
  
    0.525
Bsel_2201
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: pca:Pcar_1952 negative regulator of ferric uptake; Belongs to the Fur family.
  
    0.512
Bsel_2328
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: bba:Bd1656 ferric uptake regulator-like protein; Belongs to the Fur family.
  
    0.512
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.