STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bsel_1940PFAM: protein of unknown function DUF6 transmembrane; KEGG: bbr:BB0062 hypothetical protein. (303 aa)    
Predicted Functional Partners:
Bsel_1941
KEGG: ebr:ECB_00737 hypothetical protein.
       0.516
Bsel_1938
PFAM: protein of unknown function DUF294 nucleotidyltransferase putative; KEGG: tgr:Tgr7_3131 cyclic nucleotide-binding domain (cNMP-BD) protein.
       0.473
Bsel_1939
KEGG: ade:Adeh_2218 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter.
     
 0.461
Bsel_1518
PFAM: AzlC family protein; KEGG: dps:DP2465 branched chain amino acid ABC transporter permease.
 
     0.445
Your Current Organism:
Bacillus selenitireducens
NCBI taxonomy Id: 439292
Other names: Bacillus selenitireducens MLS10, [. selenitireducens MLS10, [Bacillus] selenitireducens MLS10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.